MACS Matchmaker

Appendix

Glossary

TermDefinition
AnalyteThe target molecule in solution that binds specifically to the ligand immobilized on the mologram.
AvidityThe cumulative binding strength when multiple binding sites engage simultaneously, resulting in slower apparent dissociation.
BackfillingThe process of immobilising a chemically similar non-active molecule into the grooves of the mologram, ensuring affinity-matched NSB suppression in complex media.
Coherent Mass Density (CMD)The diffractometric signal of FM, reported in pg/mm². Measures only mass bound specifically in register with the mologram grating; intrinsically blind to non-specific adsorption and bulk refractive-index changes.
Focal SpotThe diffraction-limited point of constructive interference produced by analyte binding on the mologram ridges.
FrontfillingThe process of immobilising the specific capture ligand onto the ridges of the mologram.
GroovesPassive, non-binding regions of the mologram that provide the periodic contrast needed for diffraction and serve as the built-in nanoscale reference.
LigandThe capture molecule immobilized on the mologram (e.g., antibody, DNA) that specifically binds the analyte of interest.
Mass Density (MD)The refractometric signal of FM, reported in pg/mm². Responds to all refractive-index changes at the surface, analogous to SPR response units. Used primarily as a diagnostic channel.
MologramA nanostructured, periodic pattern on the sensor surface composed of ligand-functionalized ridges and non-binding grooves that produces coherent scattering when analytes bind.
Mologram Naming (SM_RxCy)Single Mologram at Row x, Column yon the 8 × 8 chip grid. Example: SM_R3C4= row 3, column 4.
Nonspecific Binding (NSB)Random adsorption of molecules to the surface that generates incoherent background signal, intrinsically rejected by the CMD channel when ridge–groove chemistry is affinity-matched.
RegenerationThe process of removing bound analytes from the mologram surface to allow chip reuse or sequential measurements.
RidgesActive regions of the mologram functionalized with capture molecules where specific binding occurs.
SensogramA real-time plot of binding response (coherent mass density) versus time, showing association and dissociation phases.
WaveguideThe thin-film optical layer on the sensor chip that guides the laser light and enables evanescent field interaction with the mologram.

Abbreviations

AbbreviationFull Term
BIABiomolecular Interaction Analysis
BSABovine Serum Albumin
DDIDNA-Directed Immobilization
DELDNA-Encoded Library
FMFocal Molography
IPAIsopropyl Alcohol
KDEquilibrium Dissociation Constant
koffDissociation Rate Constant
konAssociation Rate Constant
LODLimit of Detection
MCKMulti-Cycle Kinetics
MeTzMethyl-Tetrazine
MQMilliQ (Ultrapure Water)
MWMolecular Weight
NSBNonspecific Binding
PBSPhosphate-Buffered Saline
PBS-TPBS supplemented with Tween 20
PEGPolyethylene Glycol
RSDRelative Standard Deviation
RUResponse Units (commonly used in SPR as a comparison unit)
SCKSingle-Cycle Kinetics
SDSSodium Dodecyl Sulfate
TCOTrans-Cyclooctene
TzTetrazine